Daily Papers

Large language models (LLMs) with Chain-of-Thought (CoT) prompting achieve strong reasoning but often produce unnecessarily long explanations, increasing cost and sometimes reducing accuracy. Fair comparison of efficiency-oriented approaches is hindered by fragmented evaluation practices. We introduce EffiReason-Bench, a unified benchmark for rigorous cross-paradigm evaluation of efficient reasoning methods across three categories: Reasoning Blueprints, Dynamic Execution, and Post-hoc Refinement. To enable step-by-step evaluation, we construct verified CoT annotations for CommonsenseQA and LogiQA via a pipeline that enforces standardized reasoning structures, comprehensive option-wise analysis, and human verification. We evaluate 7 methods across 6 open-source LLMs (1B-70B) on 4 datasets spanning mathematics, commonsense, and logic, and propose the E3-Score, a principled metric inspired by economic trade-off modeling that provides smooth, stable evaluation without discontinuities or heavy reliance on heuristics. Experiments show that no single method universally dominates; optimal strategies depend on backbone scale, task complexity, and architecture.

Protein design with desirable properties has been a significant challenge for many decades. Generative artificial intelligence is a promising approach and has achieved great success in various protein generation tasks. Notably, diffusion models stand out for their robust mathematical foundations and impressive generative capabilities, offering unique advantages in certain applications such as protein design. In this review, we first give the definition and characteristics of diffusion models and then focus on two strategies: Denoising Diffusion Probabilistic Models and Score-based Generative Models, where DDPM is the discrete form of SGM. Furthermore, we discuss their applications in protein design, peptide generation, drug discovery, and protein-ligand interaction. Finally, we outline the future perspectives of diffusion models to advance autonomous protein design and engineering. The E(3) group consists of all rotations, reflections, and translations in three-dimensions. The equivariance on the E(3) group can keep the physical stability of the frame of each amino acid as much as possible, and we reflect on how to keep the diffusion model E(3) equivariant for protein generation.